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cellina

  • Tutorial: Graph perturbations with Cellina
  • API
    • cellina.Cellina
    • cellina.CellinaGCN
    • cellina.compute_spatial_features
    • cellina.make_counterfactual_adata
    • cellina.make_neighbor_perturbation
    • cellina.make_perturbed_expression
    • cellina.spatial_neighbors
  • Changelog
  • Contributing guide
  • References

Index

C | G | M | S | T

C

  • cellina
    • module
  • Cellina (class in cellina)
  • CellinaGCN (class in cellina)
  • compute_spatial_features() (in module cellina)

G

  • get_counterfactual_expression() (cellina.Cellina method)
    • (cellina.CellinaGCN method)
  • get_counterfactual_latents() (cellina.Cellina method)
    • (cellina.CellinaGCN method)
  • get_latent_representation() (cellina.Cellina method)
    • (cellina.CellinaGCN method)
  • get_marginal_ll() (cellina.Cellina method)
    • (cellina.CellinaGCN method)
  • get_normalized_expression() (cellina.Cellina method)
    • (cellina.CellinaGCN method)
  • get_perturbed_expression() (cellina.Cellina method)
    • (cellina.CellinaGCN method)
  • get_perturbed_latents() (cellina.Cellina method)
    • (cellina.CellinaGCN method)

M

  • make_counterfactual_adata() (in module cellina)
  • make_neighbor_perturbation() (in module cellina)
  • make_perturbed_expression() (in module cellina)
  • module
    • cellina

S

  • setup_anndata() (cellina.Cellina class method)
    • (cellina.CellinaGCN class method)
  • spatial_neighbors() (in module cellina)

T

  • train() (cellina.Cellina method)
    • (cellina.CellinaGCN method)

By Abdul Moeed, Stefan Schrod, Martin Rohbeck, Marc Jan Bonder, Pavlo Lutsik, Oliver Stegle, Daniel Dimitrov

© Copyright 2026, Abdul Moeed, Stefan Schrod, Martin Rohbeck, Marc Jan Bonder, Pavlo Lutsik, Oliver Stegle, Daniel Dimitrov..